PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g091940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 222aa    MW: 25526.5 Da    PI: 5.7222
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g091940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.3e-1979168198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v +  +l lp +f+ ++ ++  e+++++lede+g+++e  +i +k++    l++GWk+F+ +++L++gD ++F+l++ ++f  ++ 
  Csa11g091940.1  79 FVKSMVRSHVYSCFWLGLPSRFCVDNFSE--ETIDVVLEDEEGEEYEAVYIGKKSG----LSGGWKKFALDHKLDDGDALLFELVEPNRF--KIY 165
                     89************************866..6779***************544444....9**********************9987777..888 PP

                     EE- CS
              B3  96 vfr 98 
                     vfr
  Csa11g091940.1 166 VFR 168
                     887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-2074169IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-2274170IPR015300DNA-binding pseudobarrel domain
CDDcd100177.47E-1977168No hitNo description
PfamPF023621.6E-1779169IPR003340B3 DNA binding domain
PROSITE profilePS5086313.16979170IPR003340B3 DNA binding domain
SMARTSM010199.0E-2679170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAYEEARKLR LQENHKRFQV DVETGRTLDL RRSRRNSSWA NYIARPEHEC KFASEEEKVG  60
ALNAAEEFQS CLVSPHPCFV KSMVRSHVYS CFWLGLPSRF CVDNFSEETI DVVLEDEEGE  120
EYEAVYIGKK SGLSGGWKKF ALDHKLDDGD ALLFELVEPN RFKIYVFRGN ENAHLTSAGK  180
RGRTKQSEEE DKDVDEDSSD EEYILRTTKR SSARLLSKRK A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0192282e-59AB019228.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7.
GenBankCP0026882e-59CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443547.11e-155PREDICTED: putative B3 domain-containing protein At5g58280 isoform X2
RefseqXP_010443546.11e-155PREDICTED: putative B3 domain-containing protein At5g58280 isoform X1
SwissprotQ9FHB21e-103Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLR0GRK81e-110R0GRK8_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0008_22961e-108(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161411214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-87B3 family protein